From Fedora Project Wiki
(Add Wcl and its old review ticket to bundled packages list.) |
(Update status to AmberTools12) |
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| Line 7: | Line 7: | ||
| arpack || 2.1 | | arpack || 2.1 | ||
|- | |- | ||
| blas || | | blas || 3.0? | ||
|- | |- | ||
| boost || | | boost || 1.38 | ||
|- | |- | ||
| byacc || | | byacc || 20101127 | ||
|- | |- | ||
| | | eigen || 2.92 | ||
|- | |- | ||
| | | fftw || 3.3 | ||
|- | |- | ||
| lapack || | | lapack || 3.2 | ||
|- | |- | ||
| libXmu || | | libXmu || 20001128 | ||
|- | |- | ||
| libXpm || | | libXpm || 3.4 | ||
|- | |- | ||
| | | mpi4py || 1.2.2 | ||
|- | |- | ||
| | | netcdf || 3.6.2b6 | ||
|- | |||
| tinyxml || April 2005 | |||
|- | |||
| xblas || 1.0 (2005) | |||
|} | |} | ||
| Line 33: | Line 37: | ||
|- | |- | ||
| cifparse || http://sw-tools.pdb.org/apps/CIFPARSE/source.html || || | | cifparse || http://sw-tools.pdb.org/apps/CIFPARSE/source.html || || | ||
|- | |||
| mtkpp || http://mtkpp.martinpeters.ie/ || || 0.2.0 | |||
|- | |- | ||
| parallel-netcdf || http://trac.mcs.anl.gov/projects/parallel-netcdf || || | | parallel-netcdf || http://trac.mcs.anl.gov/projects/parallel-netcdf || || | ||
|- | |- | ||
| ucpp || http://code.google.com/p/ucpp/ || || | | ucpp || http://code.google.com/p/ucpp/ || || 1.3 | ||
|- | |- | ||
| Wcl || http://search.cpan.org/~jhpb/Wcl-2.7.3/ || [https://bugzilla.redhat.com/show_bug.cgi?id=192417 Old review request] || | | Wcl || http://search.cpan.org/~jhpb/Wcl-2.7.3/ || [https://bugzilla.redhat.com/show_bug.cgi?id=192417 Old review request] || | ||
Revision as of 18:30, 2 September 2012
This is to help document the process to get AmberTools, a set of tools for Assisted Model Building with Energy Refinement (AMBER) into Fedora.
Bundled packages already in Fedora
| Fedora package | Version in AmberTools |
|---|---|
| arpack | 2.1 |
| blas | 3.0? |
| boost | 1.38 |
| byacc | 20101127 |
| eigen | 2.92 |
| fftw | 3.3 |
| lapack | 3.2 |
| libXmu | 20001128 |
| libXpm | 3.4 |
| mpi4py | 1.2.2 |
| netcdf | 3.6.2b6 |
| tinyxml | April 2005 |
| xblas | 1.0 (2005) |
Bundled packages which should be fine to put in Fedora
| Fedora package | Upstream | Review Request/Status | Version in AmberTools |
|---|---|---|---|
| cifparse | http://sw-tools.pdb.org/apps/CIFPARSE/source.html | ||
| mtkpp | http://mtkpp.martinpeters.ie/ | 0.2.0 | |
| parallel-netcdf | http://trac.mcs.anl.gov/projects/parallel-netcdf | ||
| ucpp | http://code.google.com/p/ucpp/ | 1.3 | |
| Wcl | http://search.cpan.org/~jhpb/Wcl-2.7.3/ | Old review request |
Bundled packages which may be problematic to put in Fedora
| Name | Upstream | Status |
|---|---|---|
| chamber | AmberTools | non-free license? |
| libXraw | http://canonical.org/~kragen/Xraw/index.html | non-commercial clause in license |
| leap | AmberTools | non-free license? |
| reduce | http://kinemage.biochem.duke.edu/software/reduce.php | sale restriction? |