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== ATpy ==
 
'''ATpy''' is a Python library for manipulating astronomical tables.  Details are available at [http://atpy.github.com/ http://atpy.github.com/].
 
 
== bowtie ==
 
'''bowtie''' is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).  [http://bowtie-bio.sourceforge.net/index.shtml http://bowtie-bio.sourceforge.net/index.shtml].
 
 
== DSDP ==
 
The DSDP software is a free open source implementation of an interior-point method for semidefinite programming. It provides primal and dual solutions, exploits low-rank structure and sparsity in the data, and has relatively low memory requirements for an interior-point method. It allows feasible and infeasible starting points and provides approximate certificates of infeasibility when no feasible solution exists. The dual-scaling algorithm implemented in this package has a convergence proof and worst-case polynomial complexity under mild assumptions on the data.  For full documentation refer to [http://www.mcs.anl.gov/hs/software/DSDP/ http://www.mcs.anl.gov/hs/software/DSDP/].
 
 
== fastx_toolkit ==
 
'''fastx_toolkit''' is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.  [http://hannonlab.cshl.edu/fastx_toolkit/index.html http://hannonlab.cshl.edu/fastx_toolkit/index.html].
 
 
== IBSimu ==
 
Ion Beam Simulator or '''IBSimu''' is an ion optical computer simulation package for ion optics, plasma extraction and space charge dominated ion beam transport using Vlasov iteration.  More information at [http://ibsimu.sourceforge.net/  http://ibsimu.sourceforge.net/].
 
 
== gappa ==
 
'''gappa''' is a tool intended to help verifying and formally proving properties on numerical programs dealing with floating-point or fixed-point arithmetic.  Fedora 16 upgrades to version 0.15.0.  The project's web site may be found at [http://gappa.gforge.inria.fr/ http://gappa.gforge.inria.fr/].





Revision as of 15:13, 15 January 2012

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