From Fedora Project Wiki
No edit summary |
No edit summary |
||
| Line 4: | Line 4: | ||
* [https://sourceforge.net/projects/gentle-m/ GENtle] - DNA restriction analysis and cloning tool similar to VectorNTI | * [https://sourceforge.net/projects/gentle-m/ GENtle] - DNA restriction analysis and cloning tool similar to VectorNTI | ||
* [http://www.broadinstitute.org/igv/ Integrative Genomics Viewer] - java-based graphical genomics viewer (licensed under GPLv2) | * [http://www.broadinstitute.org/igv/ Integrative Genomics Viewer] - java-based graphical genomics viewer (licensed under GPLv2) | ||
* [http://www.chevreux.org/projects_mira.html MIRA] - Genome fragment assembler for sequencing projects classified as 'hard' due to high number of similar repeats. | * [http://www.chevreux.org/projects_mira.html MIRA] - Genome fragment assembler for sequencing projects classified as 'hard' due to high number of similar repeats. Uses '''non-free jlfgr''' -- see Debian packaging. | ||
* [ftp://ftp.ncbi.nih.gov/toolbox/ NCBI BLAST and other tools] - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. | * [ftp://ftp.ncbi.nih.gov/toolbox/ NCBI BLAST and other tools] - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. | ||
** ncbi-blast+ packaged by jkaluza - https://bugzilla.redhat.com/show_bug.cgi?id=999383 | ** ncbi-blast+ packaged by jkaluza - https://bugzilla.redhat.com/show_bug.cgi?id=999383 | ||
Revision as of 20:37, 9 March 2015
- Autodock Vina - Tool for drug discovery, molecular docking and virtual screening. There's a package under http://copr.fedoraproject.org/coprs/loveshack/livhpc/
- COPASI - Simulation and analysis of biochemical networks and their dynamics, supports SBML standard for models
- Cytoscape - Platform for the analysis and visualization of complex networks, in particular molecular interaction networks and biological pathways
- GENtle - DNA restriction analysis and cloning tool similar to VectorNTI
- Integrative Genomics Viewer - java-based graphical genomics viewer (licensed under GPLv2)
- MIRA - Genome fragment assembler for sequencing projects classified as 'hard' due to high number of similar repeats. Uses non-free jlfgr -- see Debian packaging.
- NCBI BLAST and other tools - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
- ncbi-blast+ packaged by jkaluza - https://bugzilla.redhat.com/show_bug.cgi?id=999383
- NCBI C Toolkit - NCBI libraries and tools for biology applications srpm here
- NCBI C++ Toolkit - a new generation of NCBI libraries and tools for biology
- pyQPCR - qPCR analysis tool
- Staden - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK
- Taverna - Tool for automation of experimental workflows.
- The WFDB Software Package - Software for viewing, analyzing, and creating recordings of physiologic signals