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* [http://maq.sourceforge.net/bwa-man.shtml bwa] - Burrows-Wheeler Alignment Tool. | * [http://maq.sourceforge.net/bwa-man.shtml bwa] - Burrows-Wheeler Alignment Tool. | ||
* [http://emboss.sourceforge.net/ EMBOSS | * [http://emboss.sourceforge.net/ EMBOSS] - Hundreds of useful, well documented applications for molecular sequence and other analyses. | ||
* [http:// | * [http://www.chevreux.org/projects_mira.html MIRA] - Genome fragment assembler for sequencing projects classified as 'hard' due to high number of similar repeats. | ||
* [ftp://ftp.ncbi.nih.gov/toolbox/ NCBI-BLAST and other tools] - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. | * [ftp://ftp.ncbi.nih.gov/toolbox/ NCBI-BLAST and other tools] - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. | ||
* [http://staden.sourceforge.net/ Staden] - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK | |||
* [http://www.mygrid.org.uk/tools/taverna/ Taverna] - Tool for automation of experimental workflows. | |||
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Revision as of 14:14, 22 July 2009
- bwa - Burrows-Wheeler Alignment Tool.
- EMBOSS - Hundreds of useful, well documented applications for molecular sequence and other analyses.
- MIRA - Genome fragment assembler for sequencing projects classified as 'hard' due to high number of similar repeats.
- NCBI-BLAST and other tools - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
- Staden - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK
- Taverna - Tool for automation of experimental workflows.